Chicken Journal club (Bible hour)

Paper Schedule 2013

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon.

Functional specialization of gut CD103+ dendritic cells in the regulation of tissue-selective T cell homing

AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification

ß-adrenergic stimulation increases macrophage CD14 expression and E. coli phagocytosis through PKA signaling mechanisms

The lymph nodes draining the small intestine and colon are anatomically separate and immunologically distinct

CRISPR-Cas systems for editing, regulating and targeting genomes

Passenger Mutations Confound Interpretation of All Genetically Modified Congenic Mice.

Flow cytometry APC-tandem dyes are degraded through a cell-dependent mechanism

Symbiotic bacteria direct expression of an intestinal bactericidal lectin.

A direct PCR approach to accelerate analyses of human-associated microbial communities

Age, microbiota, and T cells shape diverse individual IgA repertoires in the intestine

Direct secretory effect of interleukin-1 via type I receptors in human colonic mucous epithelial cells (HT29-C1.16E)

Bacterial translocation from the gastrointestinal tract of athymic (nu/nu) mice

Graphical Perception: Theory, Experimentation, and Application to the Development of Graphical Methods

Graphical perception and graphical methods for analyzing scientific data

CX3CR1-mediated dendritic cell access to the intestinal lumen and bacterial clearance

Generation of gut-homing IgA-secreting B cells by intestinal dendritic cells

Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity

Characterization of diet-dependent metabolic serotypes: analytical and biological variability issues in rats

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

Variants of the antibody herceptin that interact with HER2 and VEGF at the antigen binding site

Differential secretion of cytokines

Protection from lethal gram-negative bacterial sepsis by targeting Toll-like receptor 4

Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5

Molecular analysis of commensal host-microbial relationships in the intestine

Autoantigen recognition is required for recruitment of IGRP(206-214)-autoreactive CD8+ T cells but is dispensable for tolerance

Simultaneous amplification and detection of specific DNA sequences

Systems biology: a brief overview

Spectrophotometer: new instrument for ultrarapid cell analysis

High-throughput sequencing of the zebrafish antibody repertoire

Requirement for RORgamma in thymocyte survival and lymphoid organ development.

Unresponsiveness of MyD88-deficient mice to endotoxin

Interleukin-6: possible biological roles during exercise

Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43

Requirement for lymphoid tissue-inducer cells in isolated follicle formation and T cell-independent immunoglobulin A generation in the gut

Rapid secretion of interleukin-1beta by microvesicle shedding

Points of significance: Power and sample size

Salmonella gut invasion involves TTSS-2-dependent epithelial traversal, basolateral exit, and uptake by epithelium-sampling lamina propria phagocytes

Independent control of immunoglobulin switch recombination at individual switch regions evidenced through Cre-loxP-mediated gene targeting

Adaptive immune features of natural killer cells

The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota

Microbiota-mediated colonization resistance against intestinal pathogens

B cell antigen receptor specificity and surface density together determine B-1 versus B-2 cell development

The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria

The adaptor MAVS promotes NLRP3 mitochondrial localization and inflammasome activation

Crohn's disease

Cytotoxic T-cell memory without antigen

T cells express a phagocyte-type NADPH oxidase that is activated after T cell receptor stimulation

A primitive T cell-independent mechanism of intestinal mucosal IgA responses to commensal bacteria

Induction of protective IgA by intestinal dendritic cells carrying commensal bacteria

Retinoic acid imprints gut-homing specificity on T cells

The role of the immune system in governing host-microbe interactions in the intestine

Commensal bacteria at the interface of host metabolism and the immune system

DCs induce CD40-independent immunoglobulin class switching through BLyS and APRIL

Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota

Differential activation of the inflammasome by caspase-1 adaptors ASC and Ipaf.

Control of early viral and bacterial distribution and disease by natural antibodies

Sequencing technologies - the next generation

Microbial flora drives interleukin 22 production in intestinal NKp46+ cells that provide innate mucosal immune defense

Eosinophils: changing perspectives in health and disease

Acquisition of a multifunctional IgA+ plasma cell phenotype in the gut

Enterotypes of the human gut microbiome

Non-haemolytic beta-amino-acid oligomers

Detection of intracytoplasmic cytokine using flow cytometry and directly conjugated anti-cytokine antibodies